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LOC9301156 auxin-responsive protein SAUR50 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9301156, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9301156
Gene description
auxin-responsive protein SAUR50
Locus tag
ARALYDRAFT_686481
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9301156 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302548.1 (22819869..22820842, complement)

NW_003302548.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9301154 Neighboring gene GDP-mannose 4,6 dehydratase 1 Neighboring gene zinc finger CCCH domain-containing protein 68 Neighboring gene uncharacterized LOC9302835 Neighboring gene protein ANTHESIS POMOTING FACTOR 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302548 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to auxin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin-responsive protein SAUR50
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302548.1 Reference v.1.0 Primary Assembly

    Range
    22819869..22820842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002866716.2 → XP_002866762.1  auxin-responsive protein SAUR50

    See identical proteins and their annotated locations for XP_002866762.1

    UniProtKB/TrEMBL
    D7MMZ5
    Conserved Domains (1) summary
    cl23790
    Location:10 → 97
    Auxin_inducible; Auxin responsive protein
Nucleotide Protein
Heading Accession and Version

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