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LOC9299545 protein ENHANCED DISEASE RESISTANCE 2-like [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9299545, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9299545
Gene description
protein ENHANCED DISEASE RESISTANCE 2-like
Locus tag
ARALYDRAFT_494427
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9299545 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302548.1 (1594648..1600856, complement)

NW_003302548.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9301311 Neighboring gene myb family transcription factor PHL11 Neighboring gene MOB kinase activator-like 1A Neighboring gene uncharacterized LOC9301313

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302548 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein ENHANCED DISEASE RESISTANCE 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302548.1 Reference v.1.0 Primary Assembly

    Range
    1594648..1600856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002865191.2 → XP_002865237.1  protein ENHANCED DISEASE RESISTANCE 2-like isoform X1

    See identical proteins and their annotated locations for XP_002865237.1

    UniProtKB/TrEMBL
    D7MTE1
    Conserved Domains (4) summary
    cd00177
    Location:192 → 363
    START; Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins
    smart00233
    Location:4 → 110
    PH; Pleckstrin homology domain
    PLN00188
    Location:1 → 721
    PLN00188; enhanced disease resistance protein (EDR2); Provisional
    pfam07059
    Location:505 → 708
    DUF1336; Protein of unknown function (DUF1336)

  2. XM_021012188.1 → XP_020867847.1  protein ENHANCED DISEASE RESISTANCE 2-like isoform X2

    Conserved Domains (1) summary
    PLN00188
    Location:1 → 632
    PLN00188; enhanced disease resistance protein (EDR2); Provisional
Nucleotide Protein
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