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rlmC 23S rRNA m(5)U747 methyltransferase [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 917679, updated on 4-Apr-2024

Summary

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Gene symbol
rlmC
Gene description
23S rRNA m(5)U747 methyltransferase
Locus tag
ECs_0939
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (1023806..1024933)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene putrescine ABC transporter permease Neighboring gene putrescine ABC transporter permease Neighboring gene inner membrane protein Neighboring gene transport protein Neighboring gene PTS system enzyme IIB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
23S rRNA m(5)U747 methyltransferase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_308966.1 23S rRNA m(5)U747 methyltransferase [Escherichia coli O157:H7 str. Sakai]

    See identical proteins and their annotated locations for NP_308966.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7E9Q8
    Conserved Domains (1) summary
    TIGR02085
    Location:2 → 374
    meth_trns_rumB; 23S rRNA (uracil-5-)-methyltransferase RumB
Nucleotide Protein
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