U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ydfZ selenoprotein [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 917351, updated on 6-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
ydfZ
Gene description
selenoprotein
Locus tag
ECs_2150
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_002695.2 (2155247..2155450)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene NAD(P)-dependent oxidoreductase Neighboring gene transcriptional repressor Neighboring gene NAD-dependent D-mannonate oxidoreductase Neighboring gene pseudo

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

Go to the top of the page Help
Preferred Names
selenoprotein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_310177.1 selenoprotein [Escherichia coli O157:H7 str. Sakai]

    See identical proteins and their annotated locations for NP_310177.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2W6NSF2, A0A2X1KKM8
    Conserved Domains (1) summary
    TIGR03318
    Location:1 → 65
    YdfZ_fam; putative selenium-binding protein YdfZ
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.