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prfH peptide chain release factor RF-1 [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 914361, updated on 6-Oct-2023

Summary

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Gene symbol
prfH
Gene description
peptide chain release factor RF-1
Locus tag
ECs_0263
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (291590..292090)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene mRNA interferase toxin of the YafO-YafN toxin-antitoxin system Neighboring gene acetyltransferase Neighboring gene hypothetical protein Neighboring gene aminoacyl-histidine dipeptidase Neighboring gene xanthine phosphoribosyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequential rescue and repair of stalled and damaged ribosome by bacterial PrfH and RtcB. Tian Y, et al. Proc Natl Acad Sci U S A, 2022 Jul 19. PMID 35858322, Free PMC Article
  2. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  3. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  4. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  5. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Sequential rescue and repair of stalled and damaged ribosome by bacterial PrfH and RtcB.
    Title: Sequential rescue and repair of stalled and damaged ribosome by bacterial PrfH and RtcB.
Submit: New GeneRIF Correction

General protein information

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Preferred Names
peptide chain release factor RF-1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_308290.1 peptide chain release factor RF-1 [Escherichia coli O157:H7 str. Sakai]

    See identical proteins and their annotated locations for NP_308290.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7L3Y8
    Conserved Domains (1) summary
    PRK08179
    Location:1 → 162
    prfH; peptide chain release factor-like protein; Reviewed
Nucleotide Protein
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Gene LinkOut

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