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hfq RNA-binding protein Hfq [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 914061, updated on 6-Oct-2023

Summary

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Gene symbol
hfq
Gene description
RNA-binding protein Hfq
Locus tag
ECs_5148
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (5254140..5254448)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene N-acetylmuramoyl-l-alanine amidase II Neighboring gene methyl-directed mismatch repair protein MutL Neighboring gene delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase Neighboring gene GTP-binding protein HflX Neighboring gene modulator for HflB protease specific for phage lambda cII repressor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Lactobacillus casei suppresses hfq gene expression in Escherichia coli O157:H7. Mahdavi S, et al. Br J Biomed Sci, 2019 Apr. PMID 30633636
  2. Structure of an Escherichia coli Hfq:RNA complex at 0.97 Å resolution. Schulz EC, et al. Acta Crystallogr F Struct Biol Commun, 2014 Nov. PMID 25372815, Free PMC Article
  3. RNA-binding protein Hfq downregulates locus of enterocyte effacement-encoded regulators independent of small regulatory RNA in enterohemorrhagic Escherichia coli. Sudo N, et al. Mol Microbiol, 2022 Jan. PMID 34411346
  4. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  5. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RNA-binding protein Hfq downregulates locus of enterocyte effacement-encoded regulators independent of small regulatory RNA in enterohemorrhagic Escherichia coli.
    Title: RNA-binding protein Hfq downregulates locus of enterocyte effacement-encoded regulators independent of small regulatory RNA in enterohemorrhagic Escherichia coli.
  2. The results showed that, hfq was down-regulated in E. coli O157:H7 by L. casei.
    Title: Lactobacillus casei suppresses hfq gene expression in Escherichia coli O157:H7.
  3. The crystal structure of Escherichia coli Hfq was identified along with its binding site for Hfq-RNA interaction.
    Title: Structure of an Escherichia coli Hfq:RNA complex at 0.97 Å resolution.
Submit: New GeneRIF Correction

General protein information

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Preferred Names
RNA-binding protein Hfq

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_313175.1 RNA-binding protein Hfq [Escherichia coli O157:H7 str. Sakai]

    See identical proteins and their annotated locations for NP_313175.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376VR90
    Conserved Domains (1) summary
    PRK00395
    Location:1 → 76
    hfq; RNA-binding protein Hfq; Provisional
Nucleotide Protein
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