U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

yafD endo/exonuclease/phosphatase family protein [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 914037, updated on 17-Dec-2024

Summary

Go to the top of the page Help
Gene symbol
yafD
Gene description
endo/exonuclease/phosphatase family protein
Locus tag
ECs_0205
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_002695.2 (234473..235252)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene tRNA-Asp Neighboring gene 2,5-diketo-D-gluconate reductase B Neighboring gene LysR family transcriptional regulator Neighboring gene S-adenosyl-L-methionine-dependent methyltransferase Neighboring gene membrane-bound lytic murein transglycosylase D

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

Go to the top of the page Help
Preferred Names
endo/exonuclease/phosphatase family protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_308232.2 endo/exonuclease/phosphatase family protein [Escherichia coli O157:H7 str. Sakai]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376ZM76, A0AAQ1T9B3
    Conserved Domains (1) summary
    PRK05421
    Location:1 → 256
    PRK05421; endonuclease/exonuclease/phosphatase family protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.