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amiR aliphatic amidase regulator [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 880573, updated on 11-Sep-2024

Summary

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Gene symbol
amiR
Gene description
aliphatic amidase regulator
Locus tag
PA3363
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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Genomic context

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Sequence:
NC_002516.2 (3773991..3774581, complement)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene fucose-binding lectin PA-IIL Neighboring gene transporter protein AmiS Neighboring gene aliphatic amidase expression-regulating protein Neighboring gene chaperone Neighboring gene acylamide amidohydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcription antitermination regulation of the Pseudomonas aeruginosa amidase operon. Wilson SA, et al. EMBO J, 1996 Nov 1. PMID 8918468, Free PMC Article
  2. Positive control of Pseudomonas aeruginosa amidase synthesis is mediated by a transcription anti-termination mechanism. Drew R, et al. J Gen Microbiol, 1989 Apr. PMID 2513374
  3. Nucleotide sequence of the aliphatic amidase regulator gene (amiR) of Pseudomonas aeruginosa. Lowe N, et al. FEBS Lett, 1989 Mar 27. PMID 2495988
  4. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  5. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PseudoCAP

Process Evidence Code Pubs
acts_upstream_of_or_within carbon utilization IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within cellular catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within positive regulation of hydrolase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of amide catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within transcription antitermination IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
aliphatic amidase regulator
NP_252053.1
  • Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    3773991..3774581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_252053.1 aliphatic amidase regulator [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_252053.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P10932
    Conserved Domains (1) summary
    COG3707
    Location:2 → 196
    AmiR; Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P10932.2

Gene LinkOut

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Molecular Biology Databases
Research Materials