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ampDh3 protein AmpDh3 [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 877713, updated on 24-Aug-2024

Summary

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Gene symbol
ampDh3
Gene description
protein AmpDh3
Locus tag
PA0807
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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Genomic context

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Sequence:
NC_002516.2 (884799..885566)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene divalent metal cation transporter MntH

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reactions of the three AmpD enzymes of Pseudomonas aeruginosa. Zhang W, et al. J Am Chem Soc, 2013 Apr 3. PMID 23510438, Free PMC Article
  2. Orthologous and Paralogous AmpD Peptidoglycan Amidases from Gram-Negative Bacteria. Rivera I, et al. Microb Drug Resist, 2016 Sep. PMID 27326855, Free PMC Article
  3. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  4. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
  5. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PseudoCAP

Function Evidence Code Pubs
enables N-acetylmuramoyl-L-alanine amidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of beta-lactamase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Gram-negative-bacterium-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
protein AmpDh3
NP_249498.1
  • 'Product name confidence: class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences)'

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    884799..885566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_249498.1 protein AmpDh3 [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_249498.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A3M5EVV7
    Conserved Domains (1) summary
    COG3023
    Location:8 → 252
    AmpD; N-acetyl-anhydromuramyl-L-alanine amidase AmpD [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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