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lncRNA:CR42549 long non-coding RNA:CR42549 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 8674102, updated on 11-Sep-2024

Summary

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Official Symbol
lncRNA:CR42549provided by FlyBase
Official Full Name
long non-coding RNA:CR42549provided by FlyBase
Primary source
FLYBASE:FBgn0260722
Locus tag
Dmel_CR42549
See related
AllianceGenome:FB:FBgn0260722
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR42549; Dmel\CR42549
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Genomic context

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See lncRNA:CR42549 in Genome Data Viewer
Location:
85D23-85D24; 3-48 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (9548104..9551806, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (5373826..5377528, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene mir-2283 stem loop Neighboring gene Lysine demethylase 3 Neighboring gene blistery Neighboring gene murashka Neighboring gene RNA-binding protein S1 Neighboring gene uncharacterized protein Neighboring gene Branched chain keto acid dehydrogenase E1 subunit alpha Neighboring gene Adaptor Protein complex 1, mu subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
  2. Seizure control through genetic and pharmacological manipulation of Pumilio in Drosophila: a key component of neuronal homeostasis. Lin WH, et al. Dis Model Mech, 2017 Feb 1. PMID 28067623, Free PMC Article
  3. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
  4. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
  5. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • lncRNA:CR42549-RA; Dmel\lncRNA:CR42549-RA; CR42549-RA; Dmel\CR42549-RA
  • lncRNA:CR42549-RB; Dmel\lncRNA:CR42549-RB; CR42549-RB; Dmel\CR42549-RB
  • lncRNA:CR42549-RC; Dmel\lncRNA:CR42549-RC; CR42549-RC; Dmel\CR42549-RC
  • lncRNA:CR42549-RD; Dmel\lncRNA:CR42549-RD; CR42549-RD; Dmel\CR42549-RD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    9548104..9551806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_033165.1 RNA Sequence

    Status: REVIEWED

  2. NR_033166.1 RNA Sequence

    Status: REVIEWED

  3. NR_033167.1 RNA Sequence

    Status: REVIEWED

  4. NR_033164.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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