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Cbr-tag-335 Protein CBR-TAG-335 [ Caenorhabditis briggsae ]

Gene ID: 8575491, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-tag-335
Gene description
Protein CBR-TAG-335
Locus tag
CBG_06266
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-tag-335 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_013487.2 (9256617..9257853, complement)

Chromosome IV - NC_013487.2Genomic Context describing neighboring genes Neighboring gene Protein CBG06264 Neighboring gene Protein CBG06265 Neighboring gene Protein CBG06267 Neighboring gene Protein CBG06268

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013487.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannose-1-phosphate guanylyltransferase (GTP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-mannose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall mannoprotein biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-TAG-335
XP_002633494.2
  • C. briggsae CBR-TAG-335 protein; contains similarity to Pfam domains PF00132 (Bacterial transferase hexapeptide (six repeats)) (2), PF00483 (Nucleotidyl transferase), PF12804 (MobA-like NTP transferase domain) contains similarity to Interpro domains IPR001451 (Bacterial transferase hexapeptide repeat), IPR005835 (Nucleotidyl transferase), IPR018357 (Hexapeptide transferase, conserved site);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013487.2 Reference assembly

    Range
    9256617..9257853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002633448.2 → XP_002633494.2  Protein CBR-TAG-335 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A8X0H9, Q61S97
    UniProtKB/TrEMBL
    A0AAE9EQ50
    Conserved Domains (2) summary
    cd06425
    Location:1 → 231
    M1P_guanylylT_B_like_N; N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins
    cl00160
    Location:259 → 338
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...
Nucleotide Protein
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