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RRT13 Rrt13p [ Saccharomyces cerevisiae S288C ]

Gene ID: 856796, updated on 4-Jan-2025

Summary

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Official Symbol
RRT13
Official Full Name
Rrt13p
Primary source
SGD:S000000868
Locus tag
YER066W
See related
AllianceGenome:SGD:S000000868; FungiDB:YER066W; VEuPathDB:YER066W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Orthologous to human FBXW9 (F-box and WD repeat domain containing 9). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See RRT13 in Genome Data Viewer
Location:
chromosome: V
Exon count:
1
Sequence:
Chromosome: V; NC_001137.3 (290242..290799)

Chromosome V - NC_001137.3Genomic Context describing neighboring genes Neighboring gene isocitrate lyase 1 Neighboring gene tRNA-Ser Neighboring gene Rgi1p Neighboring gene CCR4-NOT core ubiquitin-protein ligase subunit MOT2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001137.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae. Hontz RD, et al. Genetics, 2009 May. PMID 19270272, Free PMC Article
  2. Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Fisk DG, et al. Yeast, 2006 Sep. PMID 17001629, Free PMC Article
  3. The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Dietrich FS, et al. Nature, 1997 May 29. PMID 9169868, Free PMC Article
  4. Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae. Kyriakou D, et al. BMC Biol, 2016 Dec 7. PMID 27927215, Free PMC Article
  5. Association of yeast Upf1p with direct substrates of the NMD pathway. Johansson MJ, et al. Proc Natl Acad Sci U S A, 2007 Dec 26. PMID 18087042, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Rrt13p
NP_010988.1
  • hypothetical protein; non-essential gene identified in a screen for mutants with decreased levels of rDNA transcription

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001137.3 Reference assembly

    Range
    290242..290799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001178957.1 → NP_010988.1  TPA: Rrt13p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_010988.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D3DLX1, P40042
    UniProtKB/TrEMBL
    A6ZR20
    Conserved Domains (2) summary
    sd00039
    Location:15 → 71
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:2 → 175
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P40042.1

Gene LinkOut

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