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ECM3 putative ATPase ECM3 [ Saccharomyces cerevisiae S288C ]

Gene ID: 854259, updated on 4-Jan-2025

Summary

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Official Symbol
ECM3
Official Full Name
putative ATPase ECM3
Primary source
SGD:S000005618
Locus tag
YOR092W
See related
AllianceGenome:SGD:S000005618; FungiDB:YOR092W; VEuPathDB:YOR092W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
YOR3165W
Summary
Predicted to be involved in cell wall organization and transmembrane transport. Located in endoplasmic reticulum. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See ECM3 in Genome Data Viewer
Location:
chromosome: XV
Exon count:
1
Sequence:
Chromosome: XV; NC_001147.6 (495127..496968)

Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene type 2C protein phosphatase PTC5 Neighboring gene Tma46p Neighboring gene Cmr2p Neighboring gene Arf family GTPase ARF3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001147.6

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DNA sequencing and analysis of 130 kb from yeast chromosome XV. Voss H, et al. Yeast, 1997 Jun 15. PMID 9200815
  2. Evidence for Regulation of ECM3 Expression by Methylation of Histone H3 Lysine 4 and Intergenic Transcription in Saccharomyces cerevisiae. Raupach EA, et al. G3 (Bethesda), 2016 Sep 8. PMID 27449519, Free PMC Article
  3. Specific transcriptional responses induced by 8-methoxypsoralen and UVA in yeast. Dardalhon M, et al. FEMS Yeast Res, 2007 Sep. PMID 17608707, Free PMC Article
  4. Lactic-acid stress causes vacuolar fragmentation and impairs intracellular amino-acid homeostasis in Saccharomyces cerevisiae. Suzuki T, et al. J Biosci Bioeng, 2012 Apr. PMID 22177309
  5. A Whi7-anchored loop controls the G1 Cdk-cyclin complex at start. Yahya G, et al. Mol Cell, 2014 Jan 9. PMID 24374311

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Our results are consistent with a model in which cotranscriptional methylation of histone H3 K4, mediated by the Paf1 complex and noncoding transcription, leads to activation of ECM3 transcription
    Title: Evidence for Regulation of ECM3 Expression by Methylation of Histone H3 Lysine 4 and Intergenic Transcription in Saccharomyces cerevisiae.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in cell wall organization IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative ATPase ECM3
NP_014735.1
  • Non-essential hypothetical protein; involved in signal transduction and the genotoxic response; induced rapidly in response to treatment with 8-methoxypsoralen and UVA irradiation; relocalizes from ER to cytoplasm upon DNA replication stress; ECM3 has a paralog, YNL095C, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001147.6 Reference assembly

    Range
    495127..496968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183511.1 → NP_014735.1  TPA: putative ATPase ECM3 [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_014735.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6W2F3, Q99252
    UniProtKB/TrEMBL
    A6ZNU2, B3LJD8, C8ZI53, N1NWJ6
    Conserved Domains (1) summary
    COG0679
    Location:9 → 337
    YfdV; Predicted permease [General function prediction only]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q99252.1

Gene LinkOut

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