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gag protein [ Saccharomyces cerevisiae S288C ]

Gene ID: 853005, updated on 4-Jan-2025

Summary

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Official Full Name
gag protein
Primary source
SGD:S000007346
Locus tag
YGR109W-A
See related
AllianceGenome:SGD:S000007346; FungiDB:YGR109W-A; VEuPathDB:YGR109W-A
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables DNA binding activity. Involved in retrotransposition. Located in retrotransposon nucleocapsid. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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Location:
chromosome: VII
Exon count:
1
Sequence:
Chromosome: VII; NC_001139.9 (707610..708482)

Chromosome VII - NC_001139.9Genomic Context describing neighboring genes Neighboring gene B-type cyclin CLB6 Neighboring gene tRNA-Cys Neighboring gene gag-pol fusion protein Neighboring gene carboxylic ester hydrolase Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001139.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ty3 capsid mutations reveal early and late functions of the amino-terminal domain. Larsen LS, et al. J Virol, 2007 Jul. PMID 17442718, Free PMC Article
  2. A single zinc finger optimizes the DNA interactions of the nucleocapsid protein of the yeast retrotransposon Ty3. Chaurasiya KR, et al. Nucleic Acids Res, 2012 Jan. PMID 21917850, Free PMC Article
  3. TY3 GAG3 protein forms ordered particles in Escherichia coli. Larsen LS, et al. Virology, 2008 Jan 20. PMID 17964628, Free PMC Article
  4. Ty3 nucleocapsid controls localization of particle assembly. Larsen LS, et al. J Virol, 2008 Mar. PMID 18094177, Free PMC Article
  5. The TY3 Gag3 spacer controls intracellular condensation and uncoating. Clemens K, et al. J Virol, 2011 Apr. PMID 21270167, Free PMC Article

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
Process Evidence Code Pubs
involved_in retrotransposition IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in viral translational frameshifting IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in retrotransposon nucleocapsid IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
gag protein
NP_058162.3
  • Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001139.9 Reference assembly

    Range
    707610..708482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001184380.3 → NP_058162.3  TPA: gag protein [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_058162.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VUP2, Q07096, Q12173, Q99219, Q9P311
    Conserved Domains (1) summary
    cl29674
    Location:70 → 157
    Retrotrans_gag; Retrotransposon gag protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q12173.1

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