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CCR2 cinnamoyl coa reductase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844421, updated on 18-Sep-2024

Summary

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Official Symbol
CCR2
Official Full Name
cinnamoyl coa reductase
Primary source
TAIR:AT1G80820
Locus tag
AT1G80820
See related
Araport:AT1G80820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCCR2; cinnamoyl coa reductase; F23A5.17; F23A5_17
Summary
Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.
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Genomic context

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See CCR2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (30370474..30372799)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene natural resistance-associated macrophage protein 1 Neighboring gene WRKY DNA-binding protein 40 Neighboring gene DNA glycosylase superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two cinnamoyl-CoA reductase (CCR) genes from Arabidopsis thaliana are differentially expressed during development and in response to infection with pathogenic bacteria. Lauvergeat V, et al. Phytochemistry, 2001 Aug. PMID 11430991
  2. AtGRP7, a nuclear RNA-binding protein as a component of a circadian-regulated negative feedback loop in Arabidopsis thaliana. Heintzen C, et al. Proc Natl Acad Sci U S A, 1997 Aug 5. PMID 9238008, Free PMC Article
  3. Genes encoding glycine-rich Arabidopsis thaliana proteins with RNA-binding motifs are influenced by cold treatment and an endogenous circadian rhythm. Carpenter CD, et al. Plant Physiol, 1994 Mar. PMID 7513083, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_106730.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cinnamoyl-CoA reductase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within lignin biosynthetic process NAS
Non-traceable Author Statement
more info
  
involved_in negative regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in phenylpropanoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
cinnamoyl coa reductase
NP_178197.1
  • cinnamoyl coa reductase (CCR2); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase 1 (TAIR:AT1G15950.1); Has 10779 Blast hits to 10766 proteins in 1817 species: Archae - 140; Bacteria - 4512; Metazoa - 410; Fungi - 946; Plants - 2512; Viruses - 14; Other Eukaryotes - 2245 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30370474..30372799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335015.1 → NP_001323345.1  cinnamoyl coa reductase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WG92, A0A1P8AWR1, A0A5S9WW63

  2. NM_106730.4 → NP_178197.1  cinnamoyl coa reductase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178197.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LBL0, Q9C5Y1, Q9SAH9
    UniProtKB/TrEMBL
    A0A178WG92, A0A5S9WW63
    Conserved Domains (1) summary
    cl21454
    Location:5 → 332
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SAH9.1

Gene LinkOut

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