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Tudor/PWWP/MBT superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844420, updated on 18-Sep-2024

Summary

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Official Full Name
Tudor/PWWP/MBT superfamily protein
Primary source
TAIR:AT1G80810
Locus tag
AT1G80810
See related
Araport:AT1G80810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23A5.16; F23A5_16
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (30364946..30369154)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene XH/XS domain-containing protein Neighboring gene miscRNA Neighboring gene cinnamoyl coa reductase Neighboring gene natural resistance-associated macrophage protein 1 Neighboring gene WRKY DNA-binding protein 40 Neighboring gene DNA glycosylase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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NM_001335011.1
NM_106729.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in DNA recombination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in DNA repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in homologous recombination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mitotic sister chromatid cohesion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tudor/PWWP/MBT superfamily protein
NP_001319432.1
  • Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 103396 Blast hits to 54411 proteins in 2510 species: Archae - 599; Bacteria - 9234; Metazoa - 41155; Fungi - 13255; Plants - 5790; Viruses - 1058; Other Eukaryotes - 32305 (source: NCBI BLink).
NP_178196.2
  • Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 103106 Blast hits to 54195 proteins in 2472 species: Archae - 625; Bacteria - 9047; Metazoa - 41139; Fungi - 13239; Plants - 5738; Viruses - 1077; Other Eukaryotes - 32241 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30364946..30369154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335012.1 → NP_001321712.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1P8ARR1, A8MRD9, Q9SAI0
    UniProtKB/TrEMBL
    A0A654EQU0
    Conserved Domains (2) summary
    cd20404
    Location:559 → 609
    Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
    cl15079
    Location:31 → 232
    PDS5; Sister chromatid cohesion protein PDS5

  2. NM_001335013.1 → NP_001321713.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EQU0

  3. NM_001335014.1 → NP_001321711.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ART9

  4. NM_001335011.1 → NP_001319432.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EQU0

  5. NM_106729.2 → NP_178196.2  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178196.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EQU0, B3H4B3
Nucleotide Protein
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