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PPPDE putative thiol peptidase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844408, updated on 18-Sep-2024

Summary

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Official Full Name
PPPDE putative thiol peptidase family protein
Primary source
TAIR:AT1G80690
Locus tag
AT1G80690
See related
Araport:AT1G80690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23A5.4; F23A5_4
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (30329039..30330944, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNAse THREE-like protein 1 Neighboring gene H[+]-ATPase 9 Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene SUPPRESSOR OF AUXIN RESISTANCE 3 Neighboring gene stress response NST1-like protein Neighboring gene DROUGHT SENSITIVE 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001335002.1
NM_106717.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PPPDE putative thiol peptidase family protein
NP_565243.1
  • PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30329039..30330944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106717.3 → NP_565243.1  PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565243.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W4J2, Q8LA90
    Conserved Domains (1) summary
    pfam05903
    Location:16 → 150
    Peptidase_C97; PPPDE putative peptidase domain

  2. NM_001335002.1 → NP_001320684.1  PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EAF0, Q9SAI9
    Conserved Domains (1) summary
    pfam05903
    Location:16 → 154
    Peptidase_C97; PPPDE putative peptidase domain
Nucleotide Protein
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