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RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844396, updated on 18-Sep-2024

Summary

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Official Full Name
RNI-like superfamily protein
Primary source
TAIR:AT1G80570
Locus tag
AT1G80570
See related
Araport:AT1G80570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T21F11.10; T21F11_10
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (30290325..30292420)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Isocitrate/isopropylmalate dehydrogenase family protein Neighboring gene isopropylmalate dehydrogenase 2 Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene WRKY DNA-binding protein 66

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. F-box proteins in Arabidopsis. Xiao W, et al. Trends Plant Sci, 2000 Nov. PMID 11077244
  2. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_106705.3
NM_202462.1
NM_202463.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNI-like superfamily protein
NP_565240.1
  • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974191.1
  • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974192.1
  • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30290325..30292420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106705.3 → NP_565240.1  RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565240.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WCX0, A0A5S9WW35
    Conserved Domains (2) summary
    cd09293
    Location:64 → 296
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:237 → 262
    LRR_AMN1; leucine-rich repeat [structural motif]

  2. NM_202463.1 → NP_974192.1  RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974192.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WCX0, A0A5S9WW35
    Conserved Domains (2) summary
    cd09293
    Location:64 → 296
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:237 → 262
    LRR_AMN1; leucine-rich repeat [structural motif]

  3. NM_202462.1 → NP_974191.1  RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974191.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3EC97, Q9M8M4
    UniProtKB/TrEMBL
    A0A178WCX0, A0A5S9WW35
    Conserved Domains (2) summary
    cd09293
    Location:77 → 309
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:250 → 275
    LRR_AMN1; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3EC97.1

Gene LinkOut

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