U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SNARE-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844389, updated on 18-Sep-2024

Summary

Official Full Name
SNARE-like superfamily protein
Primary source
TAIR:AT1G80500
Locus tag
AT1G80500
See related
Araport:AT1G80500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T21F11.17; T21F11_17
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (30270445..30272668)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene plastid transcriptionally active 17 Neighboring gene TOPLESS-related 1 Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene ncRNA Neighboring gene Sterile alpha motif (SAM) domain-containing protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_106698.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
 
located_in mitochondrion HDA PubMed 

General protein information

Preferred Names
SNARE-like superfamily protein
NP_178165.2
  • SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT2G20930.1); Has 584 Blast hits to 580 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 289; Fungi - 112; Plants - 97; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30270445..30272668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334990.1NP_001320643.1  SNARE-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMS0, A0A384LFM4, A0A5S9WW27, A0A654ESB3, F4HTY0
    Conserved Domains (1) summary
    cd14825
    Location:4135
    TRAPPC2_sedlin; Trafficking protein particle complex subunit 2
  2. NM_106698.4NP_178165.2  SNARE-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178165.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMS0, A0A384LFM4, A0A5S9WW27, A0A654ESB3, F4HTY0
    Conserved Domains (1) summary
    cd14825
    Location:4135
    TRAPPC2_sedlin; Trafficking protein particle complex subunit 2