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D-isomer specific 2-hydroxyacid dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844326, updated on 18-Sep-2024

Summary

Official Full Name
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Primary source
TAIR:AT1G79870
Locus tag
AT1G79870
See related
Araport:AT1G79870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19K16.17; F19K16_17
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Genomic context

Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (30044746..30046148)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein Neighboring gene ncRNA Neighboring gene RHO guanyl-nucleotide exchange factor 12 Neighboring gene ribosomal protein S17 Neighboring gene RNA recognition motif (RRM)-containing protein Neighboring gene RAD3-like DNA-binding helicase protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene Regulator of Vps4 activity in the MVB pathway protein

Pathways from PubChem

Interactions

General gene information

NM_001198515.1
NM_106636.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm PubMed 
located_in cytoplasm  
colocalizes_with cytosol PubMed 
located_in mitochondrion PubMed 

General protein information

Preferred Names
D-isomer specific 2-hydroxyacid dehydrogenase family protein
NP_001185444.1
  • D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1).
NP_178105.1
  • D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 29704 Blast hits to 29696 proteins in 2729 species: Archae - 468; Bacteria - 18164; Metazoa - 733; Fungi - 1180; Plants - 594; Viruses - 5; Other Eukaryotes - 8560 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30044746..30046148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106636.3 → NP_178105.1  D-isomer specific 2-hydroxyacid dehydrogenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178105.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HQC5, Q9CA90
    UniProtKB/TrEMBL
    A0A178W4H7, A0A5S9WVW4
    Conserved Domains (1) summary
    cd12156
    Location:4 → 304
    HPPR; Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase
  2. NM_001198515.1 → NP_001185444.1  D-isomer specific 2-hydroxyacid dehydrogenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185444.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CA90
    Conserved Domains (2) summary
    COG1052
    Location:4 → 293
    LdhA; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]
    cd12156
    Location:4 → 285
    HPPR; Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase
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