U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CASP-like protein (DUF1677) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844316, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
CASP-like protein (DUF1677)
Primary source
TAIR:AT1G79770
Locus tag
AT1G79770
See related
Araport:AT1G79770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20B17.20; F20B17_20
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (30014233..30015392)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NADP-malic enzyme 4 Neighboring gene downstream target of AGL15-4 Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene early nodulin-like protein 7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_106626.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
CASP-like protein (DUF1677)
NP_565220.1
  • Protein of unknown function (DUF1677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1677) (TAIR:AT5G25840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30014233..30015392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106626.3 → NP_565220.1  CASP-like protein (DUF1677) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565220.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAP4, A0A654EQF4, Q9CA85
    Conserved Domains (1) summary
    pfam07911
    Location:52 → 139
    DUF1677; Protein of unknown function (DUF1677)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools