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DTA4 downstream target of AGL15-4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844315, updated on 18-Sep-2024

Summary

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Official Symbol
DTA4
Official Full Name
downstream target of AGL15-4
Primary source
TAIR:AT1G79760
Locus tag
AT1G79760
See related
Araport:AT1G79760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
downstream target of AGL15-4; F19K16.26; F19K16_26
Summary
Identified as target of the AGL15 binding motif CArG.
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Genomic context

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See DTA4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (30011981..30013495)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene hAT transposon superfamily Neighboring gene NADP-malic enzyme 4 Neighboring gene CASP-like protein (DUF1677) Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_106625.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
downstream target of AGL15-4
NP_178094.1
  • downstream target of AGL15-4 (DTA4); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    30011981..30013495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334920.1 → NP_001321122.1  downstream target of AGL15-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WVU9, Q9MA02

  2. NM_106625.4 → NP_178094.1  downstream target of AGL15-4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178094.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WVU9, A0A654ERZ4, Q9CA84
    Conserved Domains (1) summary
    pfam14226
    Location:61 → 101
    DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal
Nucleotide Protein
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