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Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844298, updated on 18-Sep-2024

Summary

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Official Full Name
Protein kinase superfamily protein
Primary source
TAIR:AT1G79600
Locus tag
AT1G79600
See related
Araport:AT1G79600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ABC1-like kinase 3; ABC1K3; F20B17.3; F20B17_3
Summary
Encodes a chloroplast ABC1-like kinase that regulates vitamin E metabolism.
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (29949910..29952726, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Neighboring gene syntaxin of plants 52 Neighboring gene Na+/H+ antiporter 6 Neighboring gene Leucine-rich repeat protein kinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis Atypical Kinases ABC1K1 and ABC1K3 Act Oppositely to Cope with Photodamage Under Red Light. Huang H, et al. Mol Plant, 2015 Jul. PMID 25882344, Free PMC Article
  2. Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway. Lundquist PK, et al. Plant Cell, 2013 May. PMID 23673981, Free PMC Article
  3. A chloroplast ABC1-like kinase regulates vitamin E metabolism in Arabidopsis. Martinis J, et al. Plant Physiol, 2013 Jun. PMID 23632854, Free PMC Article
  4. The Plastoglobule-Localized Metallopeptidase PGM48 Is a Positive Regulator of Senescence in Arabidopsis thaliana. Bhuiyan NH, et al. Plant Cell, 2016 Dec. PMID 27895226, Free PMC Article
  5. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. Vidi PA, et al. J Biol Chem, 2006 Apr 21. PMID 16414959

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ABC1Ks (activity of bc1 complex kinases) are atypical protein kinases. The ABC1K gene family is evolutionarily conserved and has greatly expanded in photosynthetic organisms. ABC1K1 and ABC1K3 act oppositely to cope with photodamage under red light. [ABC1K3]
    Title: Arabidopsis Atypical Kinases ABC1K1 and ABC1K3 Act Oppositely to Cope with Photodamage Under Red Light.
  2. Data indicate that the ABC1K1/ABC1K3 complex contributes to plastoglobules (PGs) function in prenyl-lipid metabolism, stress response, and thylakoid remodeling.
    Title: Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway.
  3. ABC1K3 affects the accumulation of VTE1-dependent metabolites, alpha-tocopherol and plastochromanol, most likely via phosphorylation of VTE1.
    Title: A chloroplast ABC1-like kinase regulates vitamin E metabolism in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_106608.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cellular response to nitrogen starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in chloroplast organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in plastoglobule organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within protein stabilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of vitamin E biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to high light intensity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to photooxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to red light IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in plastoglobule HDA PubMed 
located_in plastoglobule IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Protein kinase superfamily protein
NP_565214.1
  • Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, catalytic domain (InterPro:IPR000719), Aminoglycoside phosphotransferase (InterPro:IPR002575), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G71810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29949910..29952726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106608.4 → NP_565214.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565214.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94BV0, Q9MA15
    UniProtKB/TrEMBL
    A0A097PQG1, A0A178WNJ7, A0A5S9WVT1
    Conserved Domains (1) summary
    COG0661
    Location:101 → 606
    AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9MA15.1

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