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Carbohydrate-binding X8 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844286, updated on 18-Sep-2024

Summary

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Official Full Name
Carbohydrate-binding X8 domain superfamily protein
Primary source
TAIR:AT1G79480
Locus tag
AT1G79480
See related
Araport:AT1G79480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T8K14.10; T8K14_10
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (29897597..29899604, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ALA-interacting subunit 5 Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Aldolase-type TIM barrel family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001124149.1
NM_106596.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Carbohydrate-binding X8 domain superfamily protein
NP_001117621.1
  • Carbohydrate-binding X8 domain superfamily protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G67460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_178066.2
  • Carbohydrate-binding X8 domain superfamily protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G67460.1); Has 160219 Blast hits to 72886 proteins in 2601 species: Archae - 191; Bacteria - 25459; Metazoa - 60697; Fungi - 27560; Plants - 16034; Viruses - 4026; Other Eukaryotes - 26252 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29897597..29899604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106596.4 → NP_178066.2  Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178066.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WVR8, A0A654EQC6, Q5Q0D0
    Conserved Domains (2) summary
    smart00768
    Location:311 → 394
    X8; Possibly involved in carbohydrate binding
    PRK14971
    Location:222 → 290
    PRK14971; DNA polymerase III subunit gamma/tau

  2. NM_001124149.1 → NP_001117621.1  Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117621.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WVR8, F4IF51
    Conserved Domains (1) summary
    smart00768
    Location:310 → 393
    X8; Possibly involved in carbohydrate binding
Nucleotide Protein
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