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nitrobindin heme-binding domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844266, updated on 18-Sep-2024

Summary

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Official Full Name
nitrobindin heme-binding domain protein
Primary source
TAIR:AT1G79260
Locus tag
AT1G79260
See related
Araport:AT1G79260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
YUP8H12R.14; YUP8H12R_14
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (29813146..29814351)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene AGC kinase 1.7 Neighboring gene evolutionarily conserved C-terminal region 8 Neighboring gene nuclear pore anchor Neighboring gene tRNA-Lys

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The structure and NO binding properties of the nitrophorin-like heme-binding protein from Arabidopsis thaliana gene locus At1g79260.1. Bianchetti CM, et al. Proteins, 2010 Mar. PMID 19938152, Free PMC Article
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Based on both structural and functional similarity to the nitrophorins, the protein was named as nitrobindin and hypothesized to play a role in NO transport.
    Title: The structure and NO binding properties of the nitrophorin-like heme-binding protein from Arabidopsis thaliana gene locus At1g79260.1.
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General gene information

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NM_106576.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
nitrobindin heme-binding domain protein
NP_565204.1
  • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1794 (InterPro:IPR014878); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29813146..29814351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334877.1 → NP_001323382.1  nitrobindin heme-binding domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEW8, A0A1P8AWV1

  2. NM_106576.4 → NP_565204.1  nitrobindin heme-binding domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565204.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64527
    UniProtKB/TrEMBL
    A0A178WEW8, A0A654EQA7
    Conserved Domains (1) summary
    pfam08768
    Location:20 → 165
    DUF1794; Domain of unknown function (DUF1794)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O64527.1

Gene LinkOut

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