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SecY protein transport family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844208, updated on 18-Sep-2024

Summary

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Official Full Name
SecY protein transport family protein
Primary source
TAIR:AT1G78720
Locus tag
AT1G78720
See related
Araport:AT1G78720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9K20.24; F9K20_24
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (29605457..29607678)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Phospholipid/glycerol acyltransferase family protein Neighboring gene BES1/BZR1 homolog 4 Neighboring gene TRICHOME BIREFRINGENCE-LIKE 42 Neighboring gene FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein Neighboring gene RNI-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001334841.1
NM_001334842.1

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
SecY protein transport family protein
NP_001319405.1
  • SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT2G34250.2); Has 4820 Blast hits to 4813 proteins in 2037 species: Archae - 276; Bacteria - 3174; Metazoa - 262; Fungi - 229; Plants - 171; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29605457..29607678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106519.2 → NP_177993.1  SecY protein transport family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177993.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W485, A0A654EQ54, Q9ZV90
    Conserved Domains (1) summary
    PTZ00219
    Location:1 → 473
    PTZ00219; Sec61 alpha subunit; Provisional

  2. NM_001334841.1 → NP_001319405.1  SecY protein transport family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W485, A0A654EQ54, Q9ZV90
    Conserved Domains (1) summary
    PTZ00219
    Location:1 → 473
    PTZ00219; Sec61 alpha subunit; Provisional

  3. NM_001334842.1 → NP_001320491.1  SecY protein transport family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W485, A0A1P8AMZ3
Nucleotide Protein
Heading Accession and Version

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