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TBL42 TRICHOME BIREFRINGENCE-LIKE 42 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844207, updated on 18-Sep-2024

Summary

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Official Symbol
TBL42
Official Full Name
TRICHOME BIREFRINGENCE-LIKE 42
Primary source
TAIR:AT1G78710
Locus tag
AT1G78710
See related
Araport:AT1G78710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9K20.25; F9K20_25; TRICHOME BIREFRINGENCE-LIKE 42
Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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Genomic context

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See TBL42 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (29601253..29604610)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl hydrolase 2 Neighboring gene Phospholipid/glycerol acyltransferase family protein Neighboring gene BES1/BZR1 homolog 4 Neighboring gene SecY protein transport family protein Neighboring gene FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Acetylation of homogalacturonan and rhamnogalacturonan-I is catalyzed by a suite of trichome birefringence-like proteins. Zhong R, et al. Plant J, 2024 Feb. PMID 37934816
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001161004.1
NM_106518.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables O-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables O-acyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TRICHOME BIREFRINGENCE-LIKE 42
NP_001154476.1
  • TRICHOME BIREFRINGENCE-LIKE 42; INVOLVED IN: biological_process unknown; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 43 (TAIR:AT2G30900.1); Has 1785 Blast hits to 1336 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1785; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_177992.1
  • TRICHOME BIREFRINGENCE-LIKE 42 (TBL42); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT2G31110.2); Has 1333 Blast hits to 1315 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1331; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29601253..29604610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001161004.1 → NP_001154476.1  TRICHOME BIREFRINGENCE-LIKE 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154476.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZV89
    Conserved Domains (2) summary
    pfam13839
    Location:82 → 298
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:30 → 81
    PMR5N; PMR5 N terminal Domain

  2. NM_106518.2 → NP_177992.1  TRICHOME BIREFRINGENCE-LIKE 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177992.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IBU0, Q9ZV89
    UniProtKB/TrEMBL
    A0A178WEC3, A0A654EQ50, A0AAF0Y1V6
    Conserved Domains (2) summary
    pfam13839
    Location:89 → 354
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:37 → 88
    PMR5N; PMR5 N terminal Domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZV89.1

Gene LinkOut

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