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E3 ubiquitin-protein ligase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844153, updated on 18-Sep-2024

Summary

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Official Full Name
E3 ubiquitin-protein ligase
Primary source
TAIR:AT1G78170
Locus tag
AT1G78170
See related
Araport:AT1G78170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T11I11.11; T11I11_11
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (29413874..29415197)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene N-lysine methyltransferase Neighboring gene pumilio 7 Neighboring gene uncharacterized protein Neighboring gene Mitochondrial substrate carrier family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtEAU1 and AtEAU2, Two EAR Motif-Containing ABA Up-Regulated Novel Transcription Repressors Regulate ABA Response in Arabidopsis. Zhang N, et al. Int J Mol Sci, 2022 Aug 13. PMID 36012319, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_106467.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to abscisic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase
NP_177941.2
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29413874..29415197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106467.4 → NP_177941.2  E3 ubiquitin-protein ligase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177941.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6F4, A0A5S9WVG4, A0A654EV48, Q84JP5
Nucleotide Protein
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