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PUM7 pumilio 7 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844152, updated on 18-Sep-2024

Summary

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Official Symbol
PUM7
Official Full Name
pumilio 7
Primary source
TAIR:AT1G78160
Locus tag
AT1G78160
See related
Araport:AT1G78160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
APUM7; pumilio 7; T11I11.10; T11I11_10
Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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Genomic context

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See PUM7 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (29407608..29410484)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene N-lysine methyltransferase Neighboring gene E3 ubiquitin-protein ligase Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular characterization of Arabidopsis thaliana PUF proteins--binding specificity and target candidates. Francischini CW, et al. FEBS J, 2009 Oct. PMID 19682068
  2. The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization. Tam PP, et al. BMC Plant Biol, 2010 Mar 9. PMID 20214804, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
pumilio 7
NP_177940.2
  • pumilio 7 (PUM7); CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 8 (TAIR:AT1G22240.1); Has 2852 Blast hits to 1667 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 724; Fungi - 847; Plants - 715; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29407608..29410484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334820.1 → NP_001322141.1  pumilio 7 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIB4, A0A1P8AT22, A0A5S9WVE8, A0A654F0W7

  2. NM_106466.2 → NP_177940.2  pumilio 7 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177940.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C9R6
    UniProtKB/TrEMBL
    A0A178WIB4, A0A5S9WVE8, A0A654F0W7
    Conserved Domains (1) summary
    cd07920
    Location:325 → 645
    Pumilio; Pumilio-family RNA binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C9R6.2

Gene LinkOut

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