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RAP2.4 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844143, updated on 18-Sep-2024

Summary

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Official Symbol
RAP2.4
Official Full Name
uncharacterized protein
Primary source
TAIR:AT1G78080
Locus tag
AT1G78080
See related
Araport:AT1G78080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtWIND1; F28K19.29; F28K19_29; related to AP2 4; WIND1; wound induced dedifferentiation 1
Summary
Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling.
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Genomic context

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See RAP2.4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (29364072..29366207)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene miscRNA Neighboring gene trehalose-6-phosphate phosphatase Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Role of Arabidopsis RAP2.4 in regulating light- and ethylene-mediated developmental processes and drought stress tolerance. Lin RC, et al. Mol Plant, 2008 Jan. PMID 20031913
  2. Overexpression of the Rap2.4f transcriptional factor in Arabidopsis promotes leaf senescence. Xu H, et al. Sci China Life Sci, 2010 Oct. PMID 20953945
  3. The AP2/ERF transcription factor WIND1 controls cell dedifferentiation in Arabidopsis. Iwase A, et al. Curr Biol, 2011 Mar 22. PMID 21396822
  4. WIND1: a key molecular switch for plant cell dedifferentiation. Iwase A, et al. Plant Signal Behav, 2011 Dec. PMID 22112447, Free PMC Article
  5. Arabidopsis WIND1 induces callus formation in rapeseed, tomato, and tobacco. Iwase A, et al. Plant Signal Behav, 2013. PMID 24389814, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. How do plants transduce wound signals to induce tissue repair and organ regeneration?
    Title: How do plants transduce wound signals to induce tissue repair and organ regeneration?
  2. Metatranscriptomic Analysis of Multiple Environmental Stresses Identifies RAP2.4 Gene Associated with Arabidopsis Immunity to Botrytis cinerea.
    Title: Metatranscriptomic Analysis of Multiple Environmental Stresses Identifies RAP2.4 Gene Associated with Arabidopsis Immunity to Botrytis cinerea.
  3. WIND1 directly binds the ESR1 promoter and activates tts expression.
    Title: WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
  4. the WIND1-mediated signaling cascade to promote cell dedifferentiation might be conserved in at least several species of Brassicaceae and Solanaceae.
    Title: Arabidopsis WIND1 induces callus formation in rapeseed, tomato, and tobacco.
  5. The AP2/ERF transcription factor WIND1 controls cell dedifferentiation in Arabidopsis. [WIND1] [WOUND INDUCED DEDIFFERENTIATION 1]
    Title: The AP2/ERF transcription factor WIND1 controls cell dedifferentiation in Arabidopsis.
  6. WIND1 is induced by wounding and promotes cell dedifferentiation. WIND proteins are required to activate the local cytokinin response at the wound site.
    Title: WIND1: a key molecular switch for plant cell dedifferentiation.
  7. Rap2.4f is a positive regulator of senescence, promoting both developmental and dark-induced leaf senescence.
    Title: Overexpression of the Rap2.4f transcriptional factor in Arabidopsis promotes leaf senescence.
  8. BPM1-RAP2.4 interaction requires a complete MATH domain and the N-terminal region of RAP2.4.
    Title: Arabidopsis thaliana BTB/ POZ-MATH proteins interact with members of the ERF/AP2 transcription factor family.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_106457.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding TAS
Traceable Author Statement
more info
 PubMed 
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables DNA-binding transcription factor activity TAS
Traceable Author Statement
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cytokinin-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within ethylene-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within red or far-red light signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to heat IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to light stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to osmotic stress IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IC
Inferred by Curator
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_177931.1
  • related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29364072..29366207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106457.3 → NP_177931.1  uncharacterized protein AT1G78080 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177931.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23106, Q8H1E4, Q94K95, Q9C9S5, Q9SGZ3
    UniProtKB/TrEMBL
    A0A178WKP5, A0A5S9WVD1, A0A654EQ02
    Conserved Domains (1) summary
    smart00380
    Location:152 → 214
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H1E4.1

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