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Glycosyl hydrolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844116, updated on 18-Sep-2024

Summary

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Official Full Name
Glycosyl hydrolase superfamily protein
Primary source
TAIR:AT1G77790
Locus tag
AT1G77790
See related
Araport:AT1G77790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T32E8.12; T32E8_12
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (29250692..29251976, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene forkhead box protein, putative (DUF1644) Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene PHD finger family protein Neighboring gene ncRNA Neighboring gene Galactosyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glucan endo-1,3-beta-D-glucosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Glycosyl hydrolase superfamily protein
NP_177902.1
  • Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G77780.1); Has 2100 Blast hits to 2089 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 1; Plants - 2089; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29250692..29251976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106428.1 → NP_177902.1  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177902.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E584, Q9CA15
    Conserved Domains (1) summary
    cl23725
    Location:31 → 343
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
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