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Pleckstrin homology (PH) domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844109, updated on 18-Sep-2024

Summary

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Official Full Name
Pleckstrin homology (PH) domain superfamily protein
Primary source
TAIR:AT1G77730
Locus tag
AT1G77730
See related
Araport:AT1G77730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T32E8.6; T32E8_6
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (29214220..29215832)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene putative protein kinase 1 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase 2 Neighboring gene Ribosomal protein S13/S18 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pleckstrin homology (PH) domain superfamily protein
NP_177896.1
  • Pleckstrin homology (PH) domain superfamily protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.3); Has 729 Blast hits to 728 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 485; Fungi - 91; Plants - 115; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29214220..29215832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106422.2 → NP_177896.1  Pleckstrin homology (PH) domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177896.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WCM7, Q9CA21
    Conserved Domains (2) summary
    pfam00169
    Location:56 → 179
    PH; PH domain
    cl17171
    Location:54 → 186
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
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