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BGAL16 beta-galactosidase 16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844078, updated on 18-Sep-2024

Summary

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Official Symbol
BGAL16
Official Full Name
beta-galactosidase 16
Primary source
TAIR:AT1G77410
Locus tag
AT1G77410
See related
Araport:AT1G77410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
beta-galactosidase 16; F2P24.12; F2P24_12
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Genomic context

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See BGAL16 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
19
Sequence:
Chromosome: 1; NC_003070.9 (29088657..29093264, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene extensin-like protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene 20S proteasome beta subunit C2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334780.1
NM_001334781.1
NM_106391.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
  
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
beta-galactosidase 16
NP_177866.2
  • beta-galactosidase 16 (BGAL16); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 35 protein (TAIR:AT5G63800.1); Has 2516 Blast hits to 2225 proteins in 479 species: Archae - 17; Bacteria - 1086; Metazoa - 478; Fungi - 225; Plants - 619; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29088657..29093264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334779.1 → NP_001320598.1  beta-galactosidase 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJQ6, A0A1P8ANA8

  2. NM_106391.2 → NP_177866.2  beta-galactosidase 16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177866.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GX69, Q9CAR2, Q9FVW7
    UniProtKB/TrEMBL
    A0A178WJQ6
    Conserved Domains (4) summary
    PLN03059
    Location:1 → 815
    PLN03059; beta-galactosidase; Provisional
    pfam01301
    Location:31 → 336
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam02140
    Location:737 → 814
    Gal_Lectin; Galactose binding lectin domain
    pfam13364
    Location:442 → 540
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  3. NM_001334780.1 → NP_001320597.1  beta-galactosidase 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJQ6, A0A1P8ANB0

  4. NM_001334781.1 → NP_001320596.1  beta-galactosidase 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJQ6, A0A1P8ANA8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GX69.2

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