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thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844043, updated on 18-Sep-2024

Summary

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Official Full Name
thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
Primary source
TAIR:AT1G77090
Locus tag
AT1G77090
See related
Araport:AT1G77090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22K20.16; F22K20_16
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (28960312..28961974, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene putative DEAD-box ATP-dependent RNA helicase 29 Neighboring gene Phosphoenolpyruvate carboxylase family protein Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
  2. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Peltier JB, et al. Plant Cell, 2002 Jan. PMID 11826309, Free PMC Article
  3. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
  4. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article
  5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_106359.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in photosynthesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast stroma HDA PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid lumen HDA PubMed 
located_in cytosol HDA PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion HDA PubMed 
part_of photosystem II oxygen evolving complex IEA
Inferred from Electronic Annotation
more info
  
located_in thylakoid HDA PubMed 
located_in thylakoid lumen HDA PubMed 

General protein information

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Preferred Names
thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)
NP_565149.2
  • Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (TAIR:AT3G56650.1); Has 207 Blast hits to 207 proteins in 35 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28960312..28961974 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106359.5 → NP_565149.2  thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565149.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49292, Q94JX3
    UniProtKB/TrEMBL
    A0A178WHC8, A0A5S9WV31
    Conserved Domains (1) summary
    PLN00066
    Location:9 → 260
    PLN00066; PsbP domain-containing protein 4; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O49292.2

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