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TLP1 tubby like protein 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844025, updated on 18-Sep-2024

Summary

Official Symbol
TLP1
Official Full Name
tubby like protein 1
Primary source
TAIR:AT1G76900
Locus tag
AT1G76900
See related
Araport:AT1G76900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtTLP1; F7O12.7; tubby like protein 1
Summary
Member of TLP family
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Genomic context

See TLP1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (28881539..28885023)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene ncRNA Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene miscRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001334747.1
NM_106341.2
NM_179563.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
tubby like protein 1
NP_001319391.1
  • tubby like protein 1 (TLP1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 10 (TAIR:AT1G25280.1); Has 1519 Blast hits to 1116 proteins in 153 species: Archae - 0; Bacteria - 107; Metazoa - 432; Fungi - 111; Plants - 488; Viruses - 57; Other Eukaryotes - 324 (source: NCBI BLink).
NP_849894.1
  • tubby like protein 1 (TLP1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 10 (TAIR:AT1G25280.1); Has 1520 Blast hits to 1117 proteins in 153 species: Archae - 0; Bacteria - 107; Metazoa - 432; Fungi - 112; Plants - 488; Viruses - 57; Other Eukaryotes - 324 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28881539..28885023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179563.3NP_849894.1  tubby like protein 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849894.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZP59
    UniProtKB/TrEMBL
    A0A178WI43, A0A5S9WV08
    Conserved Domains (2) summary
    pfam01167
    Location:120450
    Tub; Tub family
    pfam12937
    Location:5799
    F-box-like
  2. NM_001334747.1NP_001319391.1  tubby like protein 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZP59
    UniProtKB/TrEMBL
    A0A178WI43, A0A5S9WV08
    Conserved Domains (2) summary
    pfam01167
    Location:120450
    Tub; Tub family
    pfam12937
    Location:5799
    F-box-like
  3. NM_106341.2NP_177816.1  tubby like protein 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177816.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZP59
    UniProtKB/TrEMBL
    A0A178WI43, A0A5S9WV08
    Conserved Domains (2) summary
    pfam01167
    Location:120450
    Tub; Tub family
    pfam12937
    Location:5799
    F-box-like