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TY1 thioredoxin Y1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844010, updated on 18-Sep-2024

Summary

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Official Symbol
TY1
Official Full Name
thioredoxin Y1
Primary source
TAIR:AT1G76760
Locus tag
AT1G76760
See related
Araport:AT1G76760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATY1; F28O16.13; F28O16_13; thioredoxin Y1; THIOREDOXIN Y1; TRX-Y1
Summary
Encodes a y-type thioredoxin (Trx-y1) localized in chloroplast stroma.
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Genomic context

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See TY1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (28811685..28813164, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene egg cell-secreted-like protein (DUF1278) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation. Née G, et al. Int J Mol Sci, 2021 Sep 27. PMID 34638735, Free PMC Article
  2. Characterization of plastidial thioredoxins from Arabidopsis belonging to the new y-type. Collin V, et al. Plant Physiol, 2004 Dec. PMID 15531707, Free PMC Article
  3. A novel extended family of stromal thioredoxins. Cain P, et al. Plant Mol Biol, 2009 Jun. PMID 19259774
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation.
    Title: A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_106326.8

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme activator activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein-disulfide reductase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of catalytic activity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
NOT located_in chloroplast thylakoid IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
thioredoxin Y1
NP_177802.2
  • thioredoxin Y1 (TY1); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y2 (TAIR:AT1G43560.1); Has 23491 Blast hits to 21806 proteins in 3039 species: Archae - 310; Bacteria - 12245; Metazoa - 3466; Fungi - 1226; Plants - 1976; Viruses - 18; Other Eukaryotes - 4250 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28811685..28813164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106326.8 → NP_177802.2  thioredoxin Y1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177802.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6NPF9, Q9SRD7
    UniProtKB/TrEMBL
    A0A178WE50, A0A5S9WUY7, A0A7G2E7S9
    Conserved Domains (1) summary
    cl00388
    Location:69 → 168
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NPF9.1

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