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ATL8 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843974, updated on 18-Sep-2024

Summary

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Official Symbol
ATL8
Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT1G76410
Locus tag
AT1G76410
See related
Araport:AT1G76410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15M4.9
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Genomic context

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See ATL8 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (28668664..28669652)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene Ribophorin I Neighboring gene outer envelope pore 21B-like protein Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Neighboring gene phosphate transporter 1;9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATL8, a RING E3 ligase, modulates root growth and phosphate homeostasis in Arabidopsis. Ramaiah M, et al. Plant Physiol Biochem, 2022 May 15. PMID 35325659
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ATL8, a RING E3 ligase, modulates root growth and phosphate homeostasis in Arabidopsis.
    Title: ATL8, a RING E3 ligase, modulates root growth and phosphate homeostasis in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_106291.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_177767.1
  • ATL8; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G20823.1); Has 9001 Blast hits to 8977 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2299; Fungi - 634; Plants - 4930; Viruses - 29; Other Eukaryotes - 1109 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28668664..28669652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106291.3 → NP_177767.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177767.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LC69, Q9S783
    UniProtKB/TrEMBL
    A0A178WF21, A0A5S9WUV0
    Conserved Domains (1) summary
    cd16454
    Location:103 → 146
    RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LC69.2

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