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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843961, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT1G76280
Locus tag
AT1G76280
See related
Araport:AT1G76280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15M4.22
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Sequence:
Chromosome: 1; NC_003070.9 (28617577..28622777, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 Neighboring gene O-fucosyltransferase family protein Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene snRNP core protein SMD3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036208.5
NM_001198480.1
NM_001334717.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_001031285.4
  • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18940.1); Has 12686 Blast hits to 5224 proteins in 153 species: Archae - 1; Bacteria - 0; Metazoa - 27; Fungi - 31; Plants - 12255; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).
NP_001185409.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1).
NP_177755.3
  • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 14296 Blast hits to 5357 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 31; Fungi - 37; Plants - 13843; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28617577..28622777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106278.5 → NP_177755.3  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177755.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SFW4, Q9SGQ6
    UniProtKB/TrEMBL
    A0A7G2E391
    Conserved Domains (3) summary
    PLN03218
    Location:406 → 636
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:527 → 554
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:527 → 570
    PPR_2; PPR repeat family

  2. NM_001334718.1 → NP_001322864.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVF2, A0A654EPE8, A0A7G2E391
    Conserved Domains (3) summary
    PLN03218
    Location:340 → 668
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:559 → 586
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:559 → 602
    PPR_2; PPR repeat family

  3. NM_001036208.5 → NP_001031285.4  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031285.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WUT5, A0A7G2E391, B6EUA8
    Conserved Domains (4) summary
    TIGR00756
    Location:559 → 592
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:559 → 586
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:559 → 602
    PPR_2; PPR repeat family
    pfam13812
    Location:592 → 625
    PPR_3; Pentatricopeptide repeat domain

  4. NM_001334717.1 → NP_001322865.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W8A4, A0A1P8AVB2, A0A384LI95

  5. NM_001198480.1 → NP_001185409.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185409.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E391, F4I2B7
    Conserved Domains (4) summary
    TIGR00756
    Location:555 → 588
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:555 → 582
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:555 → 598
    PPR_2; PPR repeat family
    pfam13812
    Location:588 → 621
    PPR_3; Pentatricopeptide repeat domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SGQ6.2

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