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OTP43 Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843829, updated on 18-Sep-2024

Summary

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Official Symbol
OTP43
Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT1G74900
Locus tag
AT1G74900
See related
Araport:AT1G74900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25A4.13; F25A4_13; organelle transcript processing defect 43
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Genomic context

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See OTP43 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (28133933..28135667)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAD(P)H:plastoquinone dehydrogenase complex subunit O Neighboring gene response regulator 15 Neighboring gene ncRNA Neighboring gene ADP-glucose pyrophosphorylase family protein Neighboring gene aldehyde dehydrogenase 10A8 Neighboring gene uncharacterized protein Neighboring gene Integrase-type DNA-binding superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana. de Longevialle AF, et al. Plant Cell, 2007 Oct. PMID 17965268, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_106148.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_177628.2
  • organelle transcript processing defect 43 (OTP43); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G77360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28133933..28135667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106148.2 → NP_177628.2  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177628.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2E906, Q67XS8
    Conserved Domains (3) summary
    PLN03218
    Location:161 → 415
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:232 → 259
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:136 → 173
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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