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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843814, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT1G74750
Locus tag
AT1G74750
See related
Araport:AT1G74750
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25A4.28; F25A4_28
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (28085753..28089642)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF1118) Neighboring gene ncRNA Neighboring gene calcium-dependent protein kinase 30 Neighboring gene zinc ion binding protein Neighboring gene Nodulin-like / Major Facilitator Superfamily protein Neighboring gene catalytics Neighboring gene Galactosyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An Arabidopsis pentatricopeptide repeat protein, SUPPRESSOR OF VARIEGATION7, is required for FtsH-mediated chloroplast biogenesis. Liu X, et al. Plant Physiol, 2010 Dec. PMID 20935174, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001334663.1
NM_106133.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_001319382.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G18900.2); Has 54690 Blast hits to 14739 proteins in 296 species: Archae - 3; Bacteria - 64; Metazoa - 559; Fungi - 736; Plants - 51726; Viruses - 0; Other Eukaryotes - 1602 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28085753..28089642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334664.1 → NP_001323335.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SSF9
    UniProtKB/TrEMBL
    A0A654ENZ3
    Conserved Domains (3) summary
    smart00463
    Location:753 → 834
    SMR; Small MutS-related domain
    PLN03218
    Location:349 → 660
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:396 → 423
    PPR; PPR repeat [structural motif]

  2. NM_001334665.1 → NP_001323334.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SSF9
    UniProtKB/TrEMBL
    A0A654ENZ3
    Conserved Domains (3) summary
    smart00463
    Location:753 → 834
    SMR; Small MutS-related domain
    PLN03218
    Location:349 → 660
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:396 → 423
    PPR; PPR repeat [structural motif]

  3. NM_001334663.1 → NP_001319382.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SSF9
    UniProtKB/TrEMBL
    A0A654ENZ3
    Conserved Domains (3) summary
    smart00463
    Location:753 → 834
    SMR; Small MutS-related domain
    PLN03218
    Location:349 → 660
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:396 → 423
    PPR; PPR repeat [structural motif]

  4. NM_106133.2 → NP_177613.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177613.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SSF9
    UniProtKB/TrEMBL
    A0A654ENZ3
    Conserved Domains (3) summary
    smart00463
    Location:753 → 834
    SMR; Small MutS-related domain
    PLN03218
    Location:349 → 660
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:396 → 423
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SSF9.1

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