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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843798, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT1G74580
Locus tag
AT1G74580
See related
Araport:AT1G74580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1M20.26; F1M20_26
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (28020548..28023905)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 98, subfamily A, polypeptide 9 Neighboring gene ncRNA Neighboring gene NAP1-related protein 1 Neighboring gene tRNA-Leu Neighboring gene glutathione S-transferase TAU 10 Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene tRNA-Leu

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_177597.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 62554 Blast hits to 14470 proteins in 307 species: Archae - 5; Bacteria - 62; Metazoa - 860; Fungi - 1230; Plants - 58100; Viruses - 0; Other Eukaryotes - 2297 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28020548..28023905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106117.2 → NP_177597.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177597.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CA58
    UniProtKB/TrEMBL
    A0A178W996, A0A5S9WUD9, A0A654ENY6
    Conserved Domains (4) summary
    TIGR00756
    Location:497 → 530
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:498 → 525
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:560 → 593
    PPR_1; PPR repeat
    pfam13041
    Location:459 → 508
    PPR_2; PPR repeat family

  2. NM_001334656.1 → NP_001322155.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CA58
    UniProtKB/TrEMBL
    A0A178W996, A0A5S9WUD9, A0A654ENY6

  3. NM_001334655.1 → NP_001322154.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CA58
    UniProtKB/TrEMBL
    A0A178W996, A0A5S9WUD9, A0A654ENY6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CA58.1

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