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GR-RBP5 glycine-rich RNA-binding protein 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843763, updated on 18-Sep-2024

Summary

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Official Symbol
GR-RBP5
Official Full Name
glycine-rich RNA-binding protein 5
Primary source
TAIR:AT1G74230
Locus tag
AT1G74230
See related
Araport:AT1G74230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1O17.10; F1O17_10; glycine-rich RNA-binding protein 5
Summary
encodes a glycine-rich RNA binding protein.
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Genomic context

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See GR-RBP5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (27914602..27917097)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene PLC-like phosphodiesterases superfamily protein Neighboring gene homeobox-like protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA Recognition Motif-Containing Protein ORRM4 Broadly Affects Mitochondrial RNA Editing and Impacts Plant Development and Flowering. Shi X, et al. Plant Physiol, 2016 Jan. PMID 26578708, Free PMC Article
  2. A family of RRM-type RNA-binding proteins specific to plant mitochondria. Vermel M, et al. Proc Natl Acad Sci U S A, 2002 Apr 30. PMID 11972043, Free PMC Article
  3. Analysis of the soluble ATP-binding proteome of plant mitochondria identifies new proteins and nucleotide triphosphate interactions within the matrix. Ito J, et al. J Proteome Res, 2006 Dec. PMID 17137349
  4. Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism. Lee CP, et al. Mol Cell Proteomics, 2008 Jul. PMID 18385124
  5. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RNA recognition motif-containing At1g74230 protein is a major mitochondrial editing factor.At1g74230 plays a role in plant development and flowering.
    Title: RNA Recognition Motif-Containing Protein ORRM4 Broadly Affects Mitochondrial RNA Editing and Impacts Plant Development and Flowering.
Submit: New GeneRIF Correction

General gene information

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NM_106083.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding HDA PubMed 
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables copper ion binding HDA PubMed 
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
enables single-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytidine to uridine editing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within mitochondrial mRNA modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in mitochondrion HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycine-rich RNA-binding protein 5
NP_177563.1
  • glycine-rich RNA-binding protein 5 (GR-RBP5); FUNCTIONS IN: RNA binding, copper ion binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 144 Blast hits to 144 proteins in 27 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27914602..27917097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106083.5 → NP_177563.1  glycine-rich RNA-binding protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177563.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C909
    UniProtKB/TrEMBL
    A0A178WFE3
    Conserved Domains (1) summary
    cl17169
    Location:35 → 109
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C909.1

Gene LinkOut

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