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Rhomboid-related intramembrane serine protease family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843754, updated on 18-Sep-2024

Summary

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Official Full Name
Rhomboid-related intramembrane serine protease family protein
Primary source
TAIR:AT1G74140
Locus tag
AT1G74140
See related
Araport:AT1G74140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9E11.9; F9E11_9
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (27876905..27879780)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene Rhomboid-related intramembrane serine protease family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene LONGIFOLIA protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001036203.1
NM_001084350.2
NM_001084351.2
NM_001124127.1
NM_106074.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Rhomboid-related intramembrane serine protease family protein
NP_001031280.1
  • Rhomboid-related intramembrane serine protease family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001077819.1
  • Rhomboid-related intramembrane serine protease family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 760 Blast hits to 760 proteins in 306 species: Archae - 12; Bacteria - 576; Metazoa - 0; Fungi - 6; Plants - 52; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
NP_001077820.1
  • Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 707 Blast hits to 707 proteins in 311 species: Archae - 8; Bacteria - 448; Metazoa - 38; Fungi - 74; Plants - 51; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
NP_001117599.1
  • Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_177554.2
  • Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 861 Blast hits to 861 proteins in 374 species: Archae - 8; Bacteria - 572; Metazoa - 38; Fungi - 80; Plants - 52; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27876905..27879780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001124127.1 → NP_001117599.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117599.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H707, B6EUB0, B6EUB8, F4HTU9, F4HTV0, Q1PFD5, Q1PFD6, Q5XVF7, Q5XVF8, Q9C6A3
    Conserved Domains (1) summary
    cl21536
    Location:155 → 310
    Rhomboid; Rhomboid family

  2. NM_001084350.2 → NP_001077819.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077819.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H707
    Conserved Domains (1) summary
    cl21536
    Location:136 → 291
    Rhomboid; Rhomboid family

  3. NM_106074.2 → NP_177554.2  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177554.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WU79, A0A654EP51
    Conserved Domains (1) summary
    cl21536
    Location:154 → 307
    Rhomboid; Rhomboid family

  4. NM_001036203.1 → NP_001031280.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031280.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H707
    Conserved Domains (1) summary
    cl21536
    Location:136 → 288
    Rhomboid; Rhomboid family

  5. NM_001084351.2 → NP_001077820.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077820.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H707
    Conserved Domains (1) summary
    cl21536
    Location:155 → 275
    Rhomboid; Rhomboid family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B3H707.1

Gene LinkOut

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