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SS2 strictosidine synthase 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843740, updated on 18-Sep-2024

Summary

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Official Symbol
SS2
Official Full Name
strictosidine synthase 2
Primary source
TAIR:AT1G74020
Locus tag
AT1G74020
See related
Araport:AT1G74020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSS-2 STRICTOSIDINE SYNTHASE; F2P9.11; F2P9_11; strictosidine synthase 2
Summary
Encodes AtSS-2 strictosidine synthase.
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Genomic context

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See SS2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (27835123..27837443, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene strictosidine synthase 3 Neighboring gene Calcium-dependent phosphotriesterase superfamily protein Neighboring gene uncharacterized protein Neighboring gene enolase 1 Neighboring gene 2-isopropylmalate synthase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cesium toxicity in Arabidopsis. Hampton CR, et al. Plant Physiol, 2004 Nov. PMID 15489280, Free PMC Article
  2. Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses. Sohani MM, et al. Plant Biol (Stuttg), 2009 Jan. PMID 19121120
  3. Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions. Devoto A, et al. Plant Mol Biol, 2005 Jul. PMID 16021335
  4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_106061.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
NOT enables strictosidine synthase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in cellular response to potassium ion starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to jasmonic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
strictosidine synthase 2
NP_177542.1
  • strictosidine synthase 2 (SS2); INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT1G74010.1); Has 965 Blast hits to 955 proteins in 193 species: Archae - 1; Bacteria - 188; Metazoa - 217; Fungi - 5; Plants - 466; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27835123..27837443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106061.4 → NP_177542.1  strictosidine synthase 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177542.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P94111, Q9C9C3
    UniProtKB/TrEMBL
    A0A178WA54, A0A5S9WU59, A0A654ENU8
    Conserved Domains (2) summary
    COG3386
    Location:44 → 293
    YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
    pfam03088
    Location:146 → 234
    Str_synth; Strictosidine synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P94111.2

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