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BBX16 B-box type zinc finger protein with CCT domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843723, updated on 18-Sep-2024

Summary

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Official Symbol
BBX16
Official Full Name
B-box type zinc finger protein with CCT domain-containing protein
Primary source
TAIR:AT1G73870
Locus tag
AT1G73870
See related
Araport:AT1G73870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
B-box domain protein 16; COL7; CONSTANS-LIKE 7; F2P9.26; F2P9_26
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Genomic context

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See BBX16 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (27778984..27780809)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DNA ligase (DUF1666) Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DNAse I-like superfamily protein Neighboring gene UDP-glucosyl transferase 89B1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CONSTANS-LIKE 7 regulates branching and shade avoidance response in Arabidopsis. Wang H, et al. J Exp Bot, 2013 Feb. PMID 23314820, Free PMC Article
  2. CONSTANS-LIKE 7 (COL7) is involved in phytochrome B (phyB)-mediated light-quality regulation of auxin homeostasis. Zhang Z, et al. Mol Plant, 2014 Sep. PMID 24908267
  3. The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors. Gong W, et al. Mol Plant, 2008 Jan. PMID 19802365, Free PMC Article
  4. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
  5. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. photo-excited phyB is required for stabilization of the COL7 protein
    Title: CONSTANS-LIKE 7 (COL7) is involved in phytochrome B (phyB)-mediated light-quality regulation of auxin homeostasis.
  2. COL7 promotes hypocotyl elongation in response to shade.
    Title: CONSTANS-LIKE 7 regulates branching and shade avoidance response in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_106047.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within secondary shoot formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within shade avoidance IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
B-box type zinc finger protein with CCT domain-containing protein
NP_177528.1
  • B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G25440.1); Has 3347 Blast hits to 2327 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3259; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27778984..27780809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106047.5 → NP_177528.1  B-box type zinc finger protein with CCT domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177528.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5XF76, Q9C9A9
    UniProtKB/TrEMBL
    A0A178WG58, A0A5S9WU55, A0A654EQE7
    Conserved Domains (2) summary
    cd19821
    Location:22 → 65
    Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
    pfam06203
    Location:345 → 387
    CCT; CCT motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C9A9.1

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