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ESP1 hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843720, updated on 18-Sep-2024

Summary

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Official Symbol
ESP1
Official Full Name
hydroxyproline-rich glycoprotein family protein
Primary source
TAIR:AT1G73840
Locus tag
AT1G73840
See related
Araport:AT1G73840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ENHANCED SILENCING PHENOTYPE 1; F25P22.26; F25P22_26
Summary
Resembles the CstF64 family of RNA processing factors that are conserved between yeast and mammals. In mammals, CstF64 is a component of the CstF complex which is required for mRNA 3'end formation along with other factors.
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Genomic context

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See ESP1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (27763617..27766372, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene BR enhanced expression 3 Neighboring gene ncRNA Neighboring gene DNA ligase (DUF1666) Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis CstF64-Like RSR1/ESP1 Protein Participates in Glucose Signaling and Flowering Time Control. Funck D, et al. Front Plant Sci, 2012. PMID 22629280, Free PMC Article
  2. Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis. Herr AJ, et al. Proc Natl Acad Sci U S A, 2006 Oct 10. PMID 17008405, Free PMC Article
  3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001334607.1
NM_106044.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulatory ncRNA-mediated post-transcriptional gene silencing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to glucose IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to glucose IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hydroxyproline-rich glycoprotein family protein
NP_177525.2
  • ENHANCED SILENCING PHENOTYPE 1 (ESP1); BEST Arabidopsis thaliana protein match is: cleavage stimulating factor 64 (TAIR:AT1G71800.1); Has 17088 Blast hits to 12613 proteins in 677 species: Archae - 8; Bacteria - 992; Metazoa - 8093; Fungi - 4211; Plants - 1941; Viruses - 196; Other Eukaryotes - 1647 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27763617..27766372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106044.6 → NP_177525.2  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177525.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W8Y4, A0A7G2E4V4, Q8VYM7
    Conserved Domains (3) summary
    pfam09770
    Location:71 → 253
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14304
    Location:355 → 388
    CSTF_C; Transcription termination and cleavage factor C-terminal
    pfam14327
    Location:15 → 72
    CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2

  2. NM_001334607.1 → NP_001320490.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AMZ0, Q9C9S8
Nucleotide Protein
Heading Accession and Version

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