EIL3 ETHYLENE-INSENSITIVE3-like 3 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: EIL3
Official Full Name: ETHYLENE-INSENSITIVE3-like 3
Primary source: TAIR:AT1G73730
Locus tag: AT1G73730
See related: Araport:AT1G73730
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ARABIDOPSIS THALIANA SULFUR LIMITATION 1; AtEIL3; ATSLIM; ETHYLENE-INSENSITIVE3-like 3; F25P22.15; F25P22_15; SLIM1; SULFUR LIMITATION 1
Summary: Encodes a putative transcription factor involved in ethylene signalling. Isolated DNA binding domain has been shown to bind DNA in vitro.
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Genomic context

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See EIL3 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 3

Sequence:: Chromosome: 1; NC_003070.9 (27730031..27732683, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The SLIM1 transcription factor is required for arsenic resistance in Arabidopsis thaliana.
Title: The SLIM1 transcription factor is required for arsenic resistance in Arabidopsis thaliana.
possible regulatory mechanism of ethylene in sulfur metabolism through direct EIN3-SLIM1 interaction
Title: EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
SLIM1, both through the action of miR395 and independently, is responsible for the increased translocation of sulfate from roots to shoots during sulfate starvation, and also for the increased rate of sulfate reduction.
Title: Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis.
DNA-binding domain NMR structure of EIL3
Title: Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.
SLIM1 functioned as a central transcriptional regulator, which controlled both the activation of sulfate acquisition and degradation of glucosinolates under -S conditions.[SLIM1]
Title: Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001334601.1

Supported by ESTs:

NM_106032.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA binding	IDA Inferred from Direct Assay more info	PubMed
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables DNA-binding transcription factor activity	TAS Traceable Author Statement more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables transcription cis-regulatory region binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within cellular response to sulfate starvation	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within cellular response to sulfate starvation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within ethylene-activated signaling pathway	TAS Traceable Author Statement more info	PubMed
acts_upstream_of_or_within regulation of DNA-templated transcription	TAS Traceable Author Statement more info	PubMed
acts_upstream_of_or_within regulation of sulfur metabolic process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in intracellular anatomical structure	TAS Traceable Author Statement more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: ETHYLENE-INSENSITIVE3-like 3

NP_177514.1

ETHYLENE-INSENSITIVE3-like 3 (EIL3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: ethylene mediated signaling pathway, cellular response to sulfate starvation, regulation of sulfur metabolic process, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: Ethylene insensitive 3 family protein (TAIR:AT3G20770.1); Has 298 Blast hits to 298 proteins in 81 species: Archae - 0; Bacteria - 53; Metazoa - 2; Fungi - 1; Plants - 234; Viruses - 4; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

27730031..27732683 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_106032.5 → NP_177514.1 ETHYLENE-INSENSITIVE3-like 3 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_177514.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O23116

UniProtKB/TrEMBL

A0A178VZZ3, A0A5S9WU37, A0A7G2E8P8

Conserved Domains (1) summary

PLN03109
Location:1 → 567

PLN03109; ETHYLENE-INSENSITIVE3-like3 protein; Provisional
NM_001334601.1 → NP_001322105.1 ETHYLENE-INSENSITIVE3-like 3 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AT39, A0A7G2E8P8