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MYB54 myb domain protein 54 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843676, updated on 18-Sep-2024

Summary

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Official Symbol
MYB54
Official Full Name
myb domain protein 54
Primary source
TAIR:AT1G73410
Locus tag
AT1G73410
See related
Araport:AT1G73410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54; ATMYB54; BW54; myb domain protein 54; T9L24.38; T9L24_38
Summary
Encodes a putative transcription factor that is a member of the R2R3-MYB family.
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Genomic context

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See MYB54 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (27601593..27603317)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Endosomal targeting BRO1-like domain-containing protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene sec34-like family protein Neighboring gene calmodulin-like protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. Kranz HD, et al. Plant J, 1998 Oct. PMID 9839469
  2. A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis. Zhong R, et al. Plant Cell, 2008 Oct. PMID 18952777, Free PMC Article
  3. Enhanced Y1H assays for Arabidopsis. Gaudinier A, et al. Nat Methods, 2011 Oct 30. PMID 22037706, Free PMC Article
  4. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
  5. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001334595.1
NM_106001.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of secondary cell wall biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb domain protein 54
NP_177484.1
  • myb domain protein 54 (MYB54); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 52 (TAIR:AT1G17950.1); Has 8946 Blast hits to 8042 proteins in 555 species: Archae - 0; Bacteria - 0; Metazoa - 900; Fungi - 630; Plants - 5453; Viruses - 5; Other Eukaryotes - 1958 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27601593..27603317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106001.3 → NP_177484.1  myb domain protein 54 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177484.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FX36, Q9ZTD7
    UniProtKB/TrEMBL
    A0A178WGB1, A0A5S9WU06
    Conserved Domains (1) summary
    PLN03091
    Location:6 → 113
    PLN03091; hypothetical protein; Provisional

  2. NM_001334595.1 → NP_001323143.1  myb domain protein 54 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WGG5, A0A1P8AW77, A0A384L3K9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FX36.1

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