Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Pyridoxal-5'-phosphate-dependent enzyme family protein
Primary source: TAIR:AT1G72810
Locus tag: AT1G72810
See related: Araport:AT1G72810
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F3N23.1; F3N23_1
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 2

Sequence:: Chromosome: 1; NC_003070.9 (27397877..27400474, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_105939.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables pyridoxal phosphate binding	IEA Inferred from Electronic Annotation more info
enables threonine synthase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in threonine biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Pyridoxal-5'-phosphate-dependent enzyme family protein

NP_565047.1

Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity, threonine synthase activity; INVOLVED IN: threonine biosynthetic process, metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Threonine synthase (InterPro:IPR004450), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: Pyridoxal-5'-phosphate-dependent enzyme family protein (TAIR:AT4G29840.1); Has 6773 Blast hits to 6773 proteins in 2056 species: Archae - 400; Bacteria - 4271; Metazoa - 80; Fungi - 26; Plants - 85; Viruses - 0; Other Eukaryotes - 1911 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

27397877..27400474 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_105939.4 → NP_565047.1 Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_565047.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9SSP5

UniProtKB/TrEMBL

A0A178WMN0, A0A5S9WTU2, A0A7G2E281

Conserved Domains (1) summary

PLN02569
Location:30 → 513

PLN02569; threonine synthase