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plastid developmental protein DAG [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843585, updated on 18-Sep-2024

Summary

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Official Full Name
plastid developmental protein DAG
Primary source
TAIR:AT1G72530
Locus tag
AT1G72530
See related
Araport:AT1G72530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28P22.28; F28P22_28; RIP7; RNA edi7ting-Interacting Protein
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (27312954..27314644)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene PLAT/LH2 domain-containing lipoxygenase family protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene tRNA synthetase beta subunit family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comprehensive high-resolution analysis of the role of an Arabidopsis gene family in RNA editing. Bentolila S, et al. PLoS Genet, 2013 Jun. PMID 23818871, Free PMC Article
  2. Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana. Zehrmann A, et al. J Biol Chem, 2015 Mar 6. PMID 25583991, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001160996.1
NM_105912.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein dimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
  
involved_in mitochondrial mRNA modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
plastid developmental protein DAG
NP_001154468.1
  • plastid developmental protein DAG, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 261 Blast hits to 241 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_177397.1
  • plastid developmental protein DAG, putative; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 238 Blast hits to 218 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27312954..27314644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105912.2 → NP_177397.1  plastid developmental protein DAG [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177397.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAH0
    UniProtKB/TrEMBL
    A0A178WAF0, A0A5S9WTE7

  2. NM_001160996.1 → NP_001154468.1  plastid developmental protein DAG [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154468.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IDD2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAH0.1

Gene LinkOut

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